OpenMEEG Namespace Reference

Namespaces
	command_line
	maths

Classes
class	analyticS
class	analyticD3
class	analyticDipPot
class	analyticDipPotDer
class	HeadMat
class	SurfSourceMat
class	DipSourceMat
class	EITSourceMat
class	Surf2VolMat
class	Head2EEGMat
class	Head2ECoGMat
class	Head2MEGMat
class	SurfSource2MEGMat
class	DipSource2MEGMat
class	DipSource2InternalPotMat
class	CorticalMat
class	CorticalMat2
class	HalfSpace
	a HalfSpace is a pair of Interface and boolean A simple domain (HalfSpace) is given by an interface (of type Interface) identifying a closed surface and a side information. More...
class	Domain
	a Domain is a vector of HalfSpace A Domain is the intersection of simple domains (of type HalfSpace). More...
class	Forward
class	GainMEG
class	GainEEG
class	GainEEGadjoint
class	GainMEGadjoint
class	GainEEGMEGadjoint
class	GainInternalPot
class	GainEITInternalPot
class	Geometry
	Geometry contains the electrophysiological model Here are stored the vertices, meshes and domains. More...
class	GeometryReader
	A class to read geometry and cond file. More...
class	Jacobi
class	Vect3array
class	Integrator
class	AdaptiveIntegrator
class	OrientedMesh
	An Oriented Mesh is a mesh associated with a boolean stating if it is well oriented. More...
class	Interface
	Interface class An interface is a closed-shape composed of oriented meshes (here pointer to meshes) More...
class	Mesh
	Mesh class. More...
class	Conductivity
class	Sensors
class	Triangle
	Triangle. More...
class	Vect3
	Vect3. More...
class	Vertex
	Vertex. More...
class	FastSparseMatrix
class	LinOpInfo
class	LinOp
struct	LinOpValue
class	Matrix
	Matrix class. More...
class	SparseMatrix
class	SymMatrix
class	Vector

Typedefs
typedef std::vector< Domain >	Domains
	A vector of Domain is called Domains. More...
typedef std::vector< Interface >	Interfaces
	A vector of Interface is called Interfaces. More...
typedef std::vector< Mesh >	Meshes
	A vector of Mesh is called Meshes. More...
using	Strings = std::vector< std::string >
typedef std::vector< Triangle >	Triangles
typedef Vect3	Normal
typedef std::vector< Normal >	Normals
typedef std::vector< Vertex >	Vertices

Enumerations
enum	Filetype {   VTK, TRI, BND, MESH,   OFF, GIFTI }
enum	DeepCopy { DEEP_COPY }

Functions
double	integral_simplified_green (const Vect3 &p0x, const double norm2p0x, const Vect3 &p1x, const double norm2p1x, const Vect3 &p1p0, const double norm2p1p0)
double	dist_point_cell (const Vect3 &, const Triangle &, Vect3 &, bool &)
OPENMEEG_EXPORT double	dist_point_interface (const Vect3 &, const Interface &, Vect3 &, Triangle &)
OPENMEEG_EXPORT std::string	dist_point_geom (const Vect3 &, const Geometry &, Vect3 &, Triangle &, double &)
void	compute_forward (Matrix &SimulatedData, const Matrix &GainMatrix, const Matrix &RealSourcesData, double NoiseLevel)
void	GeneratePlaneRotation (double &dx, double &dy, double &cs, double &sn)
void	ApplyPlaneRotation (double &dx, double &dy, double &cs, double &sn)
template<class T >
void	Update (Vector &x, int k, T &h, Vector &s, Vector v[])
template<class T , class P >
unsigned	GMRes (const T &A, const P &M, Vector &x, const Vector &b, int max_iter, double tol, unsigned m)
template<int d>
void	multadd (Vect3array< d > &target, const double scale, const Vect3array< d > &incr)
void	multadd (double &target, const double scale, const double incr)
void	multadd (Vect3 &target, const double scale, const Vect3 &incr)
template<class T >
bool	almost_equal (T x, T y, double eps=1e3)
std::string	getNameExtension (const std::string &name)
void	init_random (int seed)
double	drandom ()
double	gaussian ()
void	disp_argv (int argc, char **argv)
void	warning (std::string message)
void	print_version (const char *cmd)
void	operatorSinternal (const Mesh &, Matrix &, const Vertices &, const double &)
void	operatorDinternal (const Mesh &, Matrix &, const Vertices &, const double &)
void	operatorFerguson (const Vect3 &, const Mesh &, Matrix &, const unsigned &, const double &)
void	operatorDipolePotDer (const Vect3 &, const Vect3 &, const Mesh &, Vector &, const double &, const unsigned, const bool)
void	operatorDipolePot (const Vect3 &, const Vect3 &, const Mesh &, Vector &, const double &, const unsigned, const bool)
template<typename T >
void	_operatorD (const Triangle &T1, const Triangle &T2, T &mat, const double &coeff, const unsigned gauss_order)
void	_operatorDinternal (const Triangle &T2, const Vertex &P, Matrix &mat, const double &coeff)
double	_operatorS (const Triangle &T1, const Triangle &T2, const unsigned gauss_order)
double	_operatorSinternal (const Triangle &T, const Vertex &P)
template<typename T >
double	_operatorN (const Vertex &V1, const Vertex &V2, const Mesh &m1, const Mesh &m2, const T &mat)
double	_operatorP1P0 (const Triangle &T2, const Vertex &V1)
template<typename T >
void	operatorN (const Mesh &m1, const Mesh &m2, T &mat, const double &coeff, const unsigned gauss_order)
template<typename T >
void	operatorS (const Mesh &m1, const Mesh &m2, T &mat, const double &coeff, const unsigned gauss_order)
template<typename T >
void	operatorD (const Mesh &m1, const Mesh &m2, T &mat, const double &coeff, const unsigned gauss_order)
template<typename T >
void	operatorD (const Mesh &m1, const Mesh &m2, T &mat, const double &coeff, const unsigned gauss_order, const bool star)
template<typename T >
void	operatorP1P0 (const Mesh &m, T &mat, const double &coeff)
Vect3	_operatorFerguson (const Vect3 &x, const Vertex &V1, const Mesh &m)
template<typename REP >
std::istream &	operator>> (std::istream &is, Conductivity< REP > &m)
template<typename REP >
std::ostream &	operator<< (std::ostream &os, const Conductivity< REP > &m)
OPENMEEG_EXPORT bool	tri_tri_overlap_test_3d (double p1[3], double q1[3], double r1[3], double p2[3], double q2[3], double r2[3])
bool	coplanar_tri_tri3d (double p1[3], double q1[3], double r1[3], double p2[3], double q2[3], double r2[3], double N1[3], double N2[3])
bool	tri_tri_overlap_test_2d (double p1[2], double q1[2], double r1[2], double p2[2], double q2[2], double r2[2])
bool	tri_tri_intersection_test_3d (double p1[3], double q1[3], double r1[3], double p2[3], double q2[3], double r2[3], int *coplanar, double source[3], double target[3])
double	triangle_area (double p[3], double q[3], double r[3])
bool	ccw_tri_tri_intersection_2d (double p1[2], double q1[2], double r1[2], double p2[2], double q2[2], double r2[2])
Vect3	operator* (const double &d, const Vect3 &v)
std::istream &	operator>> (std::istream &is, Vect3 &v)
std::ostream &	operator<< (std::ostream &os, const Vect3 &v)
std::ostream &	operator<< (std::ostream &f, const FastSparseMatrix &M)
OPENMEEGMATHS_EXPORT BLAS_INT	sizet_to_int (const size_t &num)
OPENMEEGMATHS_EXPORT Vector	operator* (const double &d, const Vector &v)
OPENMEEGMATHS_EXPORT std::ostream &	operator<< (std::ostream &f, const Vector &M)
OPENMEEGMATHS_EXPORT std::istream &	operator>> (std::istream &f, Vector &M)

Variables
static const double	cordBars [4][16][4]
static const unsigned	nbPts [4] = {3, 6, 7, 16}

Typedef Documentation

typedef std::vector<Domain> OpenMEEG::Domains

A vector of Domain is called Domains.

Definition at line 129 of file domain.h.

typedef std::vector<Interface> OpenMEEG::Interfaces

A vector of Interface is called Interfaces.

Definition at line 127 of file interface.h.

typedef std::vector<Mesh> OpenMEEG::Meshes

A vector of Mesh is called Meshes.

Definition at line 309 of file mesh.h.

using OpenMEEG::Strings = typedef std::vector<std::string>

Definition at line 52 of file om_common.h.

typedef std::vector<Triangle> OpenMEEG::Triangles

Definition at line 176 of file triangle.h.

typedef Vect3 OpenMEEG::Normal

Definition at line 161 of file vect3.h.

typedef std::vector<Normal> OpenMEEG::Normals

Definition at line 162 of file vect3.h.

typedef std::vector<Vertex> OpenMEEG::Vertices

Definition at line 73 of file vertex.h.

Enumeration Type Documentation

enum OpenMEEG::Filetype

Enumerator
VTK
TRI
BND
MESH
OFF
GIFTI

Definition at line 78 of file mesh.h.

enum OpenMEEG::DeepCopy

Enumerator
DEEP_COPY

Definition at line 126 of file linop.h.

Function Documentation

double OpenMEEG::integral_simplified_green ( const Vect3 &  p0x, const double  norm2p0x, const Vect3 &  p1x, const double  norm2p1x, const Vect3 &  p1p0, const double  norm2p1p0  )

inline

Definition at line 47 of file analytics.h.

double OpenMEEG::dist_point_cell	(	const Vect3 &	,
		const Triangle &	,
		Vect3 &	,
		bool &
	)

OPENMEEG_EXPORT double OpenMEEG::dist_point_interface	(	const Vect3 &	,
		const Interface &	,
		Vect3 &	,
		Triangle &
	)

OPENMEEG_EXPORT std::string OpenMEEG::dist_point_geom	(	const Vect3 &	,
		const Geometry &	,
		Vect3 &	,
		Triangle &	,
		double &
	)

void OpenMEEG::compute_forward	(	Matrix &	SimulatedData,
		const Matrix &	GainMatrix,
		const Matrix &	RealSourcesData,
		double	NoiseLevel
	)

Definition at line 54 of file forward.h.

void OpenMEEG::GeneratePlaneRotation	(	double &	dx,
		double &	dy,
		double &	cs,
		double &	sn
	)

Definition at line 75 of file gmres.h.

void OpenMEEG::ApplyPlaneRotation	(	double &	dx,
		double &	dy,
		double &	cs,
		double &	sn
	)

Definition at line 91 of file gmres.h.

template<class T >

void OpenMEEG::Update	(	Vector &	x,
		int	k,
		T &	h,
		Vector &	s,
		Vector	v[]
	)

Definition at line 99 of file gmres.h.

template<class T , class P >

unsigned OpenMEEG::GMRes	(	const T &	A,
		const P &	M,
		Vector &	x,
		const Vector &	b,
		int	max_iter,
		double	tol,
		unsigned	m
	)

Definition at line 115 of file gmres.h.

template<int d>

void OpenMEEG::multadd ( Vect3array< d > &  target, const double  scale, const Vect3array< d > &  incr  )

inline

Definition at line 74 of file integrator.h.

void OpenMEEG::multadd ( double &  target, const double  scale, const double  incr  )

inline

Definition at line 81 of file integrator.h.

void OpenMEEG::multadd ( Vect3 &  target, const double  scale, const Vect3 &  incr  )

inline

Definition at line 86 of file integrator.h.

template<class T >

bool OpenMEEG::almost_equal	(	T	x,
		T	y,
		double	eps = 1e3
	)

Definition at line 56 of file om_common.h.

std::string OpenMEEG::getNameExtension ( const std::string &  name )

inline

Definition at line 72 of file om_utils.h.

void OpenMEEG::init_random ( int  seed )

inline

Definition at line 84 of file om_utils.h.

double OpenMEEG::drandom ( )

inline

Definition at line 94 of file om_utils.h.

double OpenMEEG::gaussian ( )

inline

Definition at line 100 of file om_utils.h.

void OpenMEEG::disp_argv ( int  argc, char **  argv  )

inline

Definition at line 109 of file om_utils.h.

void OpenMEEG::warning ( std::string  message )

inline

Definition at line 158 of file om_utils.h.

void OpenMEEG::print_version ( const char *  cmd )

inline

Definition at line 165 of file om_utils.h.

void OpenMEEG::operatorSinternal	(	const Mesh &	,
		Matrix &	,
		const Vertices &	,
		const double &
	)

void OpenMEEG::operatorDinternal	(	const Mesh &	,
		Matrix &	,
		const Vertices &	,
		const double &
	)

void OpenMEEG::operatorFerguson	(	const Vect3 &	,
		const Mesh &	,
		Matrix &	,
		const unsigned &	,
		const double &
	)

void OpenMEEG::operatorDipolePotDer	(	const Vect3 &	,
		const Vect3 &	,
		const Mesh &	,
		Vector &	,
		const double &	,
		const unsigned	,
		const bool
	)

void OpenMEEG::operatorDipolePot	(	const Vect3 &	,
		const Vect3 &	,
		const Mesh &	,
		Vector &	,
		const double &	,
		const unsigned	,
		const bool
	)

template<typename T >

void OpenMEEG::_operatorD ( const Triangle &  T1, const Triangle &  T2, T &  mat, const double &  coeff, const unsigned  gauss_order  )

inline

Definition at line 67 of file operators.h.

void OpenMEEG::_operatorDinternal ( const Triangle &  T2, const Vertex &  P, Matrix &  mat, const double &  coeff  )

inline

Definition at line 86 of file operators.h.

double OpenMEEG::_operatorS ( const Triangle &  T1, const Triangle &  T2, const unsigned  gauss_order  )

inline

Definition at line 95 of file operators.h.

double OpenMEEG::_operatorSinternal ( const Triangle &  T, const Vertex &  P  )

inline

Definition at line 114 of file operators.h.

template<typename T >

double OpenMEEG::_operatorN ( const Vertex &  V1, const Vertex &  V2, const Mesh &  m1, const Mesh &  m2, const T &  mat  )

inline

Definition at line 121 of file operators.h.

double OpenMEEG::_operatorP1P0 ( const Triangle &  T2, const Vertex &  V1  )

inline

Definition at line 149 of file operators.h.

template<typename T >

void OpenMEEG::operatorN	(	const Mesh &	m1,
		const Mesh &	m2,
		T &	mat,
		const double &	coeff,
		const unsigned	gauss_order
	)

Definition at line 157 of file operators.h.

template<typename T >

void OpenMEEG::operatorS	(	const Mesh &	m1,
		const Mesh &	m2,
		T &	mat,
		const double &	coeff,
		const unsigned	gauss_order
	)

Definition at line 259 of file operators.h.

template<typename T >

void OpenMEEG::operatorD	(	const Mesh &	m1,
		const Mesh &	m2,
		T &	mat,
		const double &	coeff,
		const unsigned	gauss_order
	)

Definition at line 305 of file operators.h.

template<typename T >

void OpenMEEG::operatorD	(	const Mesh &	m1,
		const Mesh &	m2,
		T &	mat,
		const double &	coeff,
		const unsigned	gauss_order,
		const bool	star
	)

Definition at line 332 of file operators.h.

template<typename T >

void OpenMEEG::operatorP1P0	(	const Mesh &	m,
		T &	mat,
		const double &	coeff
	)

Definition at line 350 of file operators.h.

Vect3 OpenMEEG::_operatorFerguson ( const Vect3 &  x, const Vertex &  V1, const Mesh &  m  )

inline

Definition at line 358 of file operators.h.

template<typename REP >

std::istream& OpenMEEG::operator>> ( std::istream &  is, Conductivity< REP > &  m  )

inline

Definition at line 60 of file PropertiesSpecialized.h.

template<typename REP >

std::ostream& OpenMEEG::operator<< ( std::ostream &  os, const Conductivity< REP > &  m  )

inline

Definition at line 63 of file PropertiesSpecialized.h.

bool OpenMEEG::tri_tri_overlap_test_3d	(	double	p1[3],
		double	q1[3],
		double	r1[3],
		double	p2[3],
		double	q2[3],
		double	r2[3]
	)

Definition at line 152 of file Triangle_triangle_intersection.h.

bool OpenMEEG::coplanar_tri_tri3d	(	double	p1[3],
		double	q1[3],
		double	r1[3],
		double	p2[3],
		double	q2[3],
		double	r2[3],
		double	N1[3],
		double	N2[3]
	)

Definition at line 217 of file Triangle_triangle_intersection.h.

bool OpenMEEG::tri_tri_overlap_test_2d	(	double	p1[2],
		double	q1[2],
		double	r1[2],
		double	p2[2],
		double	q2[2],
		double	r2[2]
	)

Definition at line 546 of file Triangle_triangle_intersection.h.

bool OpenMEEG::tri_tri_intersection_test_3d	(	double	p1[3],
		double	q1[3],
		double	r1[3],
		double	p2[3],
		double	q2[3],
		double	r2[3],
		int *	coplanar,
		double	source[3],
		double	target[3]
	)

Definition at line 390 of file Triangle_triangle_intersection.h.

double OpenMEEG::triangle_area	(	double	p[3],
		double	q[3],
		double	r[3]
	)

Definition at line 562 of file Triangle_triangle_intersection.h.

bool OpenMEEG::ccw_tri_tri_intersection_2d	(	double	p1[2],
		double	q1[2],
		double	r1[2],
		double	p2[2],
		double	q2[2],
		double	r2[2]
	)

Definition at line 529 of file Triangle_triangle_intersection.h.

Vect3 OpenMEEG::operator* ( const double &  d, const Vect3 &  v  )

inline

Definition at line 151 of file vect3.h.

std::istream& OpenMEEG::operator>> ( std::istream &  is, Vect3 &  v  )

inline

Definition at line 153 of file vect3.h.

std::ostream& OpenMEEG::operator<< ( std::ostream &  os, const Vect3 &  v  )

inline

Definition at line 157 of file vect3.h.

std::ostream& OpenMEEG::operator<< ( std::ostream &  f, const FastSparseMatrix &  M  )

inline

Definition at line 87 of file fast_sparse_matrix.h.

OPENMEEGMATHS_EXPORT BLAS_INT OpenMEEG::sizet_to_int ( const size_t &  num )

inline

Definition at line 56 of file linop.h.

OPENMEEGMATHS_EXPORT Vector OpenMEEG::operator* ( const double &  d, const Vector &  v  )

inline

Definition at line 260 of file vector.h.

OPENMEEGMATHS_EXPORT std::ostream& OpenMEEG::operator<<	(	std::ostream &	f,
		const Vector &	M
	)

OPENMEEGMATHS_EXPORT std::istream& OpenMEEG::operator>>	(	std::istream &	f,
		Vector &	M
	)

Variable Documentation

const double OpenMEEG::cordBars[4][16][4]

static

Definition at line 93 of file integrator.h.

const unsigned OpenMEEG::nbPts[4] = {3, 6, 7, 16}

static

Definition at line 178 of file integrator.h.