This is the complete list of members for Molecule, including all inherited members.

addAtom(unsigned char atomicNumber) AVO_OVERRIDE	Molecule	virtual
addAtom(unsigned char atomicNumber, Index uniqueId)	Molecule	virtual
addBond(const AtomType &a, const AtomType &b, unsigned char bondOrder=1) AVO_OVERRIDE	Molecule	virtual
addBond(Index atomId1, Index atomId2, unsigned char bondOrder=1) AVO_OVERRIDE	Molecule	virtual
addBond(const AtomType &a, const AtomType &b, unsigned char bondOrder, Index uniqueId)	Molecule	virtual
addCube()	Molecule
Added enum value	Molecule
addMesh()	Molecule
atom(Index index) const	Molecule
atomByUniqueId(Index uniqueId)	Molecule
atomCount() const	Molecule
atomCount(unsigned char atomicNumber) const	Molecule
atomicNumber(Index atomId) const	Molecule
atomicNumbers()	Molecule
atomicNumbers() const	Molecule
atomPosition2d(Index atomId) const	Molecule
atomPosition3d(Index atomId) const	Molecule
atomPositions2d() const	Molecule
atomPositions2d()	Molecule
atomPositions3d() const	Molecule
atomPositions3d()	Molecule
Atoms enum value	Molecule
atomSelected(Index atomId) const	Molecule
AtomType typedef	Molecule
atomUniqueId(const AtomType &atom) const	Molecule
atomUniqueId(Index atom) const	Molecule
atomUniqueIds() (defined in Molecule)	Molecule
basisSet()	Molecule
basisSet() const (defined in Molecule)	Molecule
bond(Index index) const	Molecule
bond(const AtomType &a, const AtomType &b) const	Molecule
bond(Index atomId1, Index atomId2) const	Molecule
bondByUniqueId(Index uniqueId)	Molecule
bondCount() const	Molecule
bondOrder(Index bondId) const	Molecule
bondOrders()	Molecule
bondOrders() const	Molecule
bondPair(Index bondId) const	Molecule
bondPairs()	Molecule
bondPairs() const	Molecule
Bonds enum value (defined in Molecule)	Molecule
bonds(const AtomType &a)	Molecule
bonds(Index a)	Molecule
BondType typedef	Molecule
bondUniqueId(const BondType &bond) const	Molecule
bondUniqueId(Index bond) const	Molecule
bondUniqueIds() (defined in Molecule)	Molecule
changed(unsigned int change)	Molecule	signal
clearAtoms()	Molecule	virtual
clearBonds()	Molecule	virtual
clearCubes() (defined in Molecule)	Molecule
clearMeshes() (defined in Molecule)	Molecule
coordinate3d() const (defined in Molecule)	Molecule
coordinate3dCount() (defined in Molecule)	Molecule
cube(Index index) (defined in Molecule)	Molecule
cube(Index index) const (defined in Molecule)	Molecule
cubeCount() const (defined in Molecule)	Molecule
cubes()	Molecule
cubes() const (defined in Molecule)	Molecule
CustomElementMap typedef	Molecule
customElementMap() const	Molecule
data(const std::string &name) const	Molecule
dataMap() const	Molecule
dataMap()	Molecule
emitChanged(unsigned int change)	Molecule	slot
findAtomUniqueId(Index index) const (defined in Molecule)	Molecule
findBondUniqueId(Index index) const (defined in Molecule)	Molecule
formalCharge(Index atomId) const	Molecule
formalCharges()	Molecule
formalCharges() const	Molecule
formula(const std::string &delimiter="", int showCountsOver=1) const	Molecule
graph()	Molecule
graph() const	Molecule
hasCustomElements() const	Molecule
hasData(const std::string &name) const	Molecule
hybridization(Index atomId) const	Molecule
hybridizations()	Molecule
hybridizations() const	Molecule
m_atomicNumbers (defined in Molecule)	Molecule	protected
m_basisSet (defined in Molecule)	Molecule	protected
m_bondOrders (defined in Molecule)	Molecule	protected
m_bondPairs (defined in Molecule)	Molecule	protected
m_coordinates3d (defined in Molecule)	Molecule	protected
m_cubes (defined in Molecule)	Molecule	protected
m_customElementMap (defined in Molecule)	Molecule	protected
m_data (defined in Molecule)	Molecule	protected
m_formalCharges (defined in Molecule)	Molecule	protected
m_graph (defined in Molecule)	Molecule	mutableprotected
m_graphDirty (defined in Molecule)	Molecule	mutableprotected
m_hybridizations (defined in Molecule)	Molecule	protected
m_meshes (defined in Molecule)	Molecule	protected
m_positions2d (defined in Molecule)	Molecule	protected
m_positions3d (defined in Molecule)	Molecule	protected
m_selectedAtoms (defined in Molecule)	Molecule	protected
m_unitCell (defined in Molecule)	Molecule	protected
m_vibrationFrequencies (defined in Molecule)	Molecule	protected
m_vibrationIntensities (defined in Molecule)	Molecule	protected
m_vibrationLx (defined in Molecule)	Molecule	protected
mass() const	Molecule
mesh(Index index) (defined in Molecule)	Molecule
mesh(Index index) const (defined in Molecule)	Molecule
meshCount() const (defined in Molecule)	Molecule
Modified enum value (defined in Molecule)	Molecule
Molecule(QObject *parent_=0) (defined in Molecule)	Molecule
Molecule(const Molecule &other)	Molecule
Molecule(const Core::Molecule &other)	Molecule
Avogadro::Core::Molecule::Molecule()	Molecule
MoleculeChange enum name	Molecule
NoChange enum value	Molecule
operator=(const Molecule &other)	Molecule
operator=(const Core::Molecule &other)	Molecule
perceiveBondsSimple()	Molecule
PersistentAtomType typedef	Molecule
PersistentBondType typedef	Molecule
removeAtom(Index index) AVO_OVERRIDE	Molecule	virtual
removeAtom(const AtomType &atom) AVO_OVERRIDE	Molecule	virtual
removeBond(Index index) AVO_OVERRIDE	Molecule	virtual
removeBond(const BondType &bond) AVO_OVERRIDE	Molecule	virtual
removeBond(const AtomType &atom1, const AtomType &atom2) AVO_OVERRIDE	Molecule	virtual
removeBond(Index atom1, Index atom2) AVO_OVERRIDE	Molecule	virtual
Removed enum value (defined in Molecule)	Molecule
setAtomicNumber(Index atomId, unsigned char atomicNumber)	Molecule
setAtomicNumbers(const Core::Array< unsigned char > &nums)	Molecule
setAtomPosition2d(Index atomId, const Vector2 &pos)	Molecule
setAtomPosition3d(Index atomId, const Vector3 &pos)	Molecule
setAtomPositions2d(const Core::Array< Vector2 > &pos)	Molecule
setAtomPositions3d(const Core::Array< Vector3 > &pos)	Molecule
setAtomSelected(Index atomId, bool selected)	Molecule
setBasisSet(BasisSet *basis)	Molecule
setBondOrder(Index bondId, unsigned char order)	Molecule
setBondOrders(const Array< unsigned char > &orders)	Molecule
setBondPair(Index bondId, const std::pair< Index, Index > &pair)	Molecule
setBondPairs(const Array< std::pair< Index, Index > > &pairs)	Molecule
setCoordinate3d(int coord) (defined in Molecule)	Molecule
setCoordinate3d(const Array< Vector3 > &coords, int index) (defined in Molecule)	Molecule
setCustomElementMap(const CustomElementMap &map)	Molecule
setData(const std::string &name, const Variant &value)	Molecule
setDataMap(const VariantMap &map)	Molecule
setFormalCharge(Index atomId, signed char charge)	Molecule
setFormalCharges(const Core::Array< signed char > &charges)	Molecule
setHybridization(Index atomId, AtomHybridization hybridization)	Molecule
setHybridizations(const Core::Array< AtomHybridization > &hybs)	Molecule
setUnitCell(UnitCell *uc)	Molecule
setVibrationFrequencies(const Array< double > &freq) (defined in Molecule)	Molecule
setVibrationIntensities(const Array< double > &intensities) (defined in Molecule)	Molecule
setVibrationLx(const Array< Array< Vector3 > > &lx) (defined in Molecule)	Molecule
undoMolecule() (defined in Molecule)	Molecule
UnitCell enum value (defined in Molecule)	Molecule
unitCell()	Molecule
unitCell() const	Molecule
updateGraph() const	Molecule	protected
vibrationFrequencies() const (defined in Molecule)	Molecule
vibrationIntensities() const (defined in Molecule)	Molecule
vibrationLx(int mode) const (defined in Molecule)	Molecule
~Molecule()	Molecule	virtual