Package org.jmol.api

Interface JmolPropertyManager

All Known Implementing Classes:

PropertyManager

public interface JmolPropertyManager

Method Summary

Modifier and Type	Method	Description
boolean	checkPropertyParameter(String name)
Object	extractProperty(Object property, Object args, int pt, javajs.util.Lst<Object> v2, boolean isCompiled)
String	fixJMEFormalCharges(javajs.util.BS bsAtoms, String s)
String	getAtomData(String atomExpression, String type, boolean allTrajectories)
String	getChimeInfo(int tok, javajs.util.BS selectionSet)
String	getDefaultPropertyParam(int propertyID)
Map<String,Object>	getLigandInfo(Object atomExpression)
String	getModelCml(javajs.util.BS bs, int nAtomsMax, boolean addBonds, boolean doTransform, boolean allTrajectories)
String	getModelExtract(javajs.util.BS atomBitSet, boolean doTransform, boolean isModelKit, String type, boolean allTrajectories)
String	getModelFileInfo(javajs.util.BS visibleFramesBitSet)
Map<String,Object>	getModelInfo(Object atomExpression)
String	getPdbAtomData(javajs.util.BS bs, javajs.util.OC out, boolean asPQR, boolean doTransform, boolean allTrajectories)
String	getPdbData(int modelIndex, String type, javajs.util.BS bsA, Object[] parameters, javajs.util.OC oc, boolean addStructure)
Object	getProperty(String returnType, String infoType, Object paramInfo)
int	getPropertyNumber(String name)
void	setViewer(Viewer vwr)

Method Detail

setViewer

void setViewer(Viewer vwr)

getProperty

Object getProperty(String returnType,
                   String infoType,
                   Object paramInfo)

getDefaultPropertyParam

String getDefaultPropertyParam(int propertyID)

getPropertyNumber

int getPropertyNumber(String name)

checkPropertyParameter

boolean checkPropertyParameter(String name)

extractProperty

Object extractProperty(Object property,
                       Object args,
                       int pt,
                       javajs.util.Lst<Object> v2,
                       boolean isCompiled)

getModelInfo

Map<String,Object> getModelInfo(Object atomExpression)

getLigandInfo

Map<String,Object> getLigandInfo(Object atomExpression)

getModelFileInfo

String getModelFileInfo(javajs.util.BS visibleFramesBitSet)

getChimeInfo

String getChimeInfo(int tok,
                    javajs.util.BS selectionSet)

getModelExtract

String getModelExtract(javajs.util.BS atomBitSet,
                       boolean doTransform,
                       boolean isModelKit,
                       String type,
                       boolean allTrajectories)

getPdbAtomData

String getPdbAtomData(javajs.util.BS bs,
                      javajs.util.OC out,
                      boolean asPQR,
                      boolean doTransform,
                      boolean allTrajectories)

getPdbData

String getPdbData(int modelIndex,
                  String type,
                  javajs.util.BS bsA,
                  Object[] parameters,
                  javajs.util.OC oc,
                  boolean addStructure)

getModelCml

String getModelCml(javajs.util.BS bs,
                   int nAtomsMax,
                   boolean addBonds,
                   boolean doTransform,
                   boolean allTrajectories)

getAtomData

String getAtomData(String atomExpression,
                   String type,
                   boolean allTrajectories)

fixJMEFormalCharges

String fixJMEFormalCharges(javajs.util.BS bsAtoms,
                           String s)