DelPhiBinaryReader

java.lang.Object
- org.jmol.jvxl.readers.SurfaceReader
- - org.jmol.jvxl.readers.SurfaceFileReader
  - - org.jmol.jvxl.readers.VolumeFileReader
    - - org.jmol.jvxl.readers.DelPhiBinaryReader

All Implemented Interfaces:: VertexDataServer

class DelPhiBinaryReader
extends VolumeFileReader

Field Summary

Fields
Modifier and Type Field Description

private float[] data

private int pt
- Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader
  ac, boundingBox, canDownsample, downsampleFactor, downsampleRemainders, endOfData, isAngstroms, nData, negativeAtomCount, nSkipX, nSkipY, nSkipZ, nSurfaces, readerClosed
- Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader
  binarydoc, br, line, next, out
- Fields inherited from class org.jmol.jvxl.readers.SurfaceReader
  allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes

Constructor Summary

Constructors
Constructor Description

DelPhiBinaryReader()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`(package private) void`	`init2(SurfaceGenerator sg, BufferedReader br)`
`protected float`	`nextVoxel()`
`private float[]`	`readFloatArray()`
`protected void`	`readParameters()`	this reader has the critical scaling information at the end, so we just load the data straight into an array.
`private String`	`readString()`
`protected void`	`skipData(int nPoints)`

Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader
checkAtomLine, closeReader, getNextVoxelValue, getPlane, getPlaneNCI, getSPFv, getSurfacePointAndFraction, getValue, getVoxelBitSet, gotoData, init2VFR, initializeSurfaceData, readSurfaceData, readSurfaceDataVFR, readVolumeData, readVolumeDataVFR, readVolumeParameters, readVoxelVector, recordData, skipComments, skipDataVFR, swapXZ

Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader
closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipTo

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - data
```
private float[] data
```
  - pt
```
private int pt
```
- Constructor Detail
  - DelPhiBinaryReader
```
DelPhiBinaryReader()
```
- Method Detail
  - init2
```
void init2(SurfaceGenerator sg,
           BufferedReader br)
```
    Overrides:
    
    init2 in class VolumeFileReader
    
    Parameters:
    
    sg -
  - readParameters
```
protected void readParameters()
                       throws Exception
```
    this reader has the critical scaling information at the end, so we just load the data straight into an array.
    
    Specified by:
    
    readParameters in class VolumeFileReader
    
    Throws:
    
    Exception
  - readString
```
private String readString()
                   throws Exception
```
    Throws:
    
    Exception
  - readFloatArray
```
private float[] readFloatArray()
                        throws Exception
```
    Throws:
    
    Exception
  - nextVoxel
```
protected float nextVoxel()
                   throws Exception
```
    Overrides:
    
    nextVoxel in class VolumeFileReader
    
    Throws:
    
    Exception
  - skipData
```
protected void skipData(int nPoints)
                 throws Exception
```
    Overrides:
    
    skipData in class VolumeFileReader
    
    Throws:
    
    Exception