Package org.jmol.script

Class ScriptManager

java.lang.Object

org.jmol.script.ScriptManager

All Implemented Interfaces:

JmolScriptManager

public class ScriptManager
extends Object
implements JmolScriptManager

Field Summary

Fields

Modifier and Type	Field	Description
private JmolThread	commandWatcherThread
private ScriptEval	eval
private JmolScriptEvaluator	evalTemp
private boolean	isScriptQueued
private static int	prevCovalentVersion
private Thread[]	queueThreads
private int	scriptIndex
javajs.util.Lst<javajs.util.Lst<Object>>	scriptQueue
private boolean[]	scriptQueueRunning
private boolean	useCommandWatcherThread
private Viewer	vwr

Constructor Summary

Constructors

Constructor	Description
ScriptManager()

Method Summary

Modifier and Type	Method	Description
javajs.util.BS	addHydrogensInline(javajs.util.BS bsAtoms, javajs.util.Lst<Atom> vConnections, javajs.util.P3[] pts)
private Object	addScr(String returnType, String strScript, String statusList, boolean isQuiet)
String	addScript(String strScript, boolean isQuiet)
boolean	checkHalt(String str, boolean isInsert)
private boolean	checkResume(String str)
private String	checkScriptExecution(String strScript, boolean isInsert)
private boolean	checkStepping(String str)
void	clear(boolean isAll)
void	clearCommandWatcherThread()
void	clearQueue()
String	evalFile(String strFilename)
String	evalStringQuietSync(String strScript, boolean isQuiet, boolean allowSyncScript)
Object	evalStringWaitStatusQueued(String returnType, String strScript, String statusList, boolean isQuiet, boolean isQueued)
private void	flushQueue(String command)
javajs.util.BS	getAtomBitSetEval(JmolScriptEvaluator eval, Object atomExpression)
private String	getDragDropFileTypeName(String fileName)
javajs.util.Lst<Object>	getScriptItem(boolean watching, boolean isByCommandWatcher)
javajs.util.Lst<javajs.util.Lst<Object>>	getScriptQueue()
private String	getZipDirectoryAsString(String fileName)
(package private) void	interruptQueueThreads()
boolean	isQueueProcessing()
boolean	isScriptQueued()
private ScriptEval	newScriptEvaluator()
void	openFileAsync(String fileName, int flags)	From file dropping.
void	queueThreadFinished(int pt)
void	runScriptNow()
Object	scriptCheckRet(String strScript, boolean returnContext)
static void	setStateScriptVersion(Viewer vwr, String version)
JmolScriptEvaluator	setViewer(Viewer vwr)
void	startCommandWatcher(boolean isStart)
private void	startScriptQueue(boolean startedByCommandWatcher)
void	waitForQueue()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

vwr

private Viewer vwr

eval

private ScriptEval eval

evalTemp

private JmolScriptEvaluator evalTemp

queueThreads

private Thread[] queueThreads

scriptQueueRunning

private boolean[] scriptQueueRunning

commandWatcherThread

private JmolThread commandWatcherThread

scriptQueue

public javajs.util.Lst<javajs.util.Lst<Object>> scriptQueue

useCommandWatcherThread

private boolean useCommandWatcherThread

scriptIndex

private int scriptIndex

isScriptQueued

private boolean isScriptQueued

prevCovalentVersion

private static int prevCovalentVersion

Constructor Detail

ScriptManager

public ScriptManager()

Method Detail

getScriptQueue

public javajs.util.Lst<javajs.util.Lst<Object>> getScriptQueue()

Specified by:

getScriptQueue in interface JmolScriptManager

isScriptQueued

public boolean isScriptQueued()

Specified by:

isScriptQueued in interface JmolScriptManager

setViewer

public JmolScriptEvaluator setViewer(Viewer vwr)

Specified by:

setViewer in interface JmolScriptManager

newScriptEvaluator

private ScriptEval newScriptEvaluator()

clear

public void clear(boolean isAll)

Specified by:

clear in interface JmolScriptManager

addScript

public String addScript(String strScript,
                        boolean isQuiet)

Specified by:

addScript in interface JmolScriptManager

addScr

private Object addScr(String returnType,
                      String strScript,
                      String statusList,
                      boolean isQuiet)

clearQueue

public void clearQueue()

Specified by:

clearQueue in interface JmolScriptManager

waitForQueue

public void waitForQueue()

Specified by:

waitForQueue in interface JmolScriptManager

isQueueProcessing

public boolean isQueueProcessing()

Specified by:

isQueueProcessing in interface JmolScriptManager

flushQueue

private void flushQueue(String command)

startScriptQueue

private void startScriptQueue(boolean startedByCommandWatcher)

getScriptItem

public javajs.util.Lst<Object> getScriptItem(boolean watching,
                                             boolean isByCommandWatcher)

Specified by:

getScriptItem in interface JmolScriptManager

startCommandWatcher

public void startCommandWatcher(boolean isStart)

Specified by:

startCommandWatcher in interface JmolScriptManager

interruptQueueThreads

void interruptQueueThreads()

clearCommandWatcherThread

public void clearCommandWatcherThread()

queueThreadFinished

public void queueThreadFinished(int pt)

Specified by:

queueThreadFinished in interface JmolScriptManager

runScriptNow

public void runScriptNow()

evalFile

public String evalFile(String strFilename)

Specified by:

evalFile in interface JmolScriptManager

evalStringWaitStatusQueued

public Object evalStringWaitStatusQueued(String returnType,
                                         String strScript,
                                         String statusList,
                                         boolean isQuiet,
                                         boolean isQueued)

Specified by:

evalStringWaitStatusQueued in interface JmolScriptManager

checkScriptExecution

private String checkScriptExecution(String strScript,
                                    boolean isInsert)

checkResume

private boolean checkResume(String str)

checkStepping

private boolean checkStepping(String str)

evalStringQuietSync

public String evalStringQuietSync(String strScript,
                                  boolean isQuiet,
                                  boolean allowSyncScript)

Specified by:

evalStringQuietSync in interface JmolScriptManager

checkHalt

public boolean checkHalt(String str,
                         boolean isInsert)

Specified by:

checkHalt in interface JmolScriptManager

getAtomBitSetEval

public javajs.util.BS getAtomBitSetEval(JmolScriptEvaluator eval,
                                        Object atomExpression)

Specified by:

getAtomBitSetEval in interface JmolScriptManager

scriptCheckRet

public Object scriptCheckRet(String strScript,
                             boolean returnContext)

Specified by:

scriptCheckRet in interface JmolScriptManager

openFileAsync

public void openFileAsync(String fileName,
                          int flags)

From file dropping.

Specified by:

openFileAsync in interface JmolScriptManager

Parameters:

fileName -

flags - 1=pdbCartoons, 2=no scripting, 4=append, 8=noAutoPlay

getDragDropFileTypeName

private String getDragDropFileTypeName(String fileName)

getZipDirectoryAsString

private String getZipDirectoryAsString(String fileName)

setStateScriptVersion

public static void setStateScriptVersion(Viewer vwr,
                                         String version)

addHydrogensInline

public javajs.util.BS addHydrogensInline(javajs.util.BS bsAtoms,
                                         javajs.util.Lst<Atom> vConnections,
                                         javajs.util.P3[] pts)
                                  throws Exception

Specified by:

addHydrogensInline in interface JmolScriptManager

Throws:

Exception