Package org.jmol.shape

Class MeshCollection

java.lang.Object

org.jmol.shape.Shape

org.jmol.shape.MeshCollection

Direct Known Subclasses:

CGO, Draw, Isosurface

public abstract class MeshCollection
extends Shape

Field Summary

Fields

Modifier and Type	Field	Description
protected javajs.util.BS	bsDisplay
short	colix
protected int	color
protected int[]	connections
Mesh	currentMesh
protected float	displayWithinDistance2
protected javajs.util.Lst<javajs.util.P3>	displayWithinPoints
boolean	explicitID
protected Map<String,Mesh>	htObjects
protected boolean	isDisplayWithinNot
boolean	isFixed
protected Mesh	linkedMesh
int	meshCount
Mesh[]	meshes
protected int	modelIndex
int	nUnnamed
protected Mesh	pickedMesh
protected int	pickedModel
protected javajs.util.T3	pickedPt
protected int	pickedVertex
static String	PREVIOUS_MESH_ID
protected String	previousMeshID
String[]	title

Fields inherited from class org.jmol.shape.Shape

bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr

Constructor Summary

Constructors

Constructor	Description
MeshCollection()

Method Summary

Modifier and Type	Method	Description
void	allocMesh(String thisID, Mesh m)
protected void	checkExplicit(String id)
protected void	clean()
private void	deleteMesh()
void	deleteMeshI(int i)
protected void	deleteMeshKey(String key)
int	getIndexFromName(String id)
Mesh	getMesh(String thisID)
protected javajs.util.Lst<Mesh>	getMeshList(String key, boolean justOne)	Get matching list of meshes, order reversed
protected Map<String,Object>	getPickedPoint(javajs.util.T3 v, int modelIndex)
protected boolean	getPropDataMC(String property, Object[] data)
protected Object	getPropMC(String property, int index)
private Object	getVertices(Mesh mesh)
void	initShape()
void	merge(MeshCollection mc)	called by ParallelProcessor at completion
protected void	resetObjects()
private Mesh	setMesh(String thisID)
private void	setMeshTokenProperty(Mesh m, int tokProp, boolean bProp, boolean testD)
void	setModelVisibilityFlags(javajs.util.BS bsModels)
protected void	setPropMC(String propertyName, Object value, javajs.util.BS bs)
protected void	setStatusPicked(int flag, javajs.util.T3 v, Map<String,Object> map)
protected void	setTokenProperty(int tokProp, boolean bProp, boolean testD)

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getProperty, getPropertyData, getPropShape, getShapeDetail, getShapeState, getSize, getSizeG, getTranslucentLabel, initializeShape, initModelSet, replaceGroup, setAtomClickability, setModelSet, setProperty, setPropS, setShapeSizeRD, setSize, setSizeRD, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

meshCount

public int meshCount

meshes

public Mesh[] meshes

currentMesh

public Mesh currentMesh

isFixed

public boolean isFixed

nUnnamed

public int nUnnamed

colix

public short colix

explicitID

public boolean explicitID

previousMeshID

protected String previousMeshID

linkedMesh

protected Mesh linkedMesh

modelIndex

protected int modelIndex

displayWithinDistance2

protected float displayWithinDistance2

isDisplayWithinNot

protected boolean isDisplayWithinNot

displayWithinPoints

protected javajs.util.Lst<javajs.util.P3> displayWithinPoints

bsDisplay

protected javajs.util.BS bsDisplay

title

public String[] title

pickedMesh

protected Mesh pickedMesh

pickedModel

protected int pickedModel

pickedVertex

protected int pickedVertex

pickedPt

protected javajs.util.T3 pickedPt

connections

protected int[] connections

htObjects

protected Map<String,Mesh> htObjects

color

protected int color

PREVIOUS_MESH_ID

public static final String PREVIOUS_MESH_ID

See Also:

Constant Field Values

Constructor Detail

MeshCollection

public MeshCollection()

Method Detail

setMesh

private Mesh setMesh(String thisID)

allocMesh

public void allocMesh(String thisID,
                      Mesh m)

merge

public void merge(MeshCollection mc)

called by ParallelProcessor at completion

Parameters:

mc -

initShape

public void initShape()

Specified by:

initShape in class Shape

setPropMC

protected void setPropMC(String propertyName,
                         Object value,
                         javajs.util.BS bs)

checkExplicit

protected void checkExplicit(String id)

setTokenProperty

protected void setTokenProperty(int tokProp,
                                boolean bProp,
                                boolean testD)

setMeshTokenProperty

private void setMeshTokenProperty(Mesh m,
                                  int tokProp,
                                  boolean bProp,
                                  boolean testD)

getPropDataMC

protected boolean getPropDataMC(String property,
                                Object[] data)

getMeshList

protected javajs.util.Lst<Mesh> getMeshList(String key,
                                            boolean justOne)

Get matching list of meshes, order reversed

Parameters:

key -

justOne -

Returns:

list in reverse order, highest index first

getPropMC

protected Object getPropMC(String property,
                           int index)

getVertices

private Object getVertices(Mesh mesh)

clean

protected void clean()

deleteMesh

private void deleteMesh()

deleteMeshKey

protected void deleteMeshKey(String key)

deleteMeshI

public void deleteMeshI(int i)

resetObjects

protected void resetObjects()

getMesh

public Mesh getMesh(String thisID)

getIndexFromName

public int getIndexFromName(String id)

Overrides:

getIndexFromName in class Shape

Returns:

index

setModelVisibilityFlags

public void setModelVisibilityFlags(javajs.util.BS bsModels)

Overrides:

setModelVisibilityFlags in class Shape

setStatusPicked

protected void setStatusPicked(int flag,
                               javajs.util.T3 v,
                               Map<String,Object> map)

getPickedPoint

protected Map<String,Object> getPickedPoint(javajs.util.T3 v,
                                                  int modelIndex)