Package org.jmol.shapespecial

Class Polyhedron

java.lang.Object

org.jmol.shapespecial.Polyhedron

public class Polyhedron
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
private javajs.util.BS	bsFlat
javajs.util.P3	center
Atom	centralAtom
short	colix
short	colixEdge
boolean	collapsed
private float	distanceRef
private int[]	elemNos
int[][]	faces
private int[][]	faceTriangles
String	id
(package private) Map<String,Object>	info
(package private) boolean	isFullyLit
boolean	isValid
int	modelIndex
private javajs.util.V3[]	normals
private short[]	normixes
(package private) int	nVertices
private javajs.util.P3	offset
(package private) javajs.util.P4[]	planes
private SymmetryInterface	pointGroup	includes vertices as atoms, with atomic numbers
private SymmetryInterface	pointGroupFamily	includes vertices as generic points
float	pointScale
String	polySmiles
float	scale
String	smarts
String	smiles
int[][]	triangles
javajs.util.P3[]	vertices
int	visibilityFlags
(package private) boolean	visible
private Float	volume

Constructor Summary

Constructors

Constructor	Description
Polyhedron()

Method Summary

Modifier and Type	Method	Description
int[]	getElemNos()
(package private) Map<String,Object>	getInfo(Viewer vwr, String property)
short[]	getNormixes()
(package private) String	getState(Viewer vwr)
(package private) String	getSymmetry(Viewer vwr, boolean withPointGroup)
private Float	getVolume()	allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code
(package private) void	move(javajs.util.M4 mat, javajs.util.BS bsMoved)
(package private) Polyhedron	set(String id, int modelIndex, javajs.util.P3 atomOrPt, javajs.util.P3[] points, int nPoints, int vertexCount, int[][] triangles, int triangleCount, int[][] faces, int[][] faceTriangles, javajs.util.V3[] normals, javajs.util.BS bsFlat, boolean collapsed, float distanceRef, float pointScale)
(package private) Polyhedron	setInfo(Viewer vwr, Map<String,Object> info, Atom[] at)
(package private) void	setOffset(javajs.util.P3 value)
private int[][]	toInt2(boolean isSV, Object o)
private float	triangleArea(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)
private float	triangleVolume(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

info

Map<String,Object> info

id

public String id

center

public javajs.util.P3 center

centralAtom

public Atom centralAtom

vertices

public javajs.util.P3[] vertices

triangles

public int[][] triangles

faces

public int[][] faces

nVertices

int nVertices

collapsed

public boolean collapsed

bsFlat

private javajs.util.BS bsFlat

distanceRef

private float distanceRef

normals

private javajs.util.V3[] normals

normixes

private short[] normixes

planes

javajs.util.P4[] planes

smiles

public String smiles

smarts

public String smarts

polySmiles

public String polySmiles

pointGroup

private SymmetryInterface pointGroup

includes vertices as atoms, with atomic numbers

pointGroupFamily

private SymmetryInterface pointGroupFamily

includes vertices as generic points

volume

private Float volume

visible

boolean visible

isFullyLit

boolean isFullyLit

isValid

public boolean isValid

colixEdge

public short colixEdge

visibilityFlags

public int visibilityFlags

colix

public short colix

modelIndex

public int modelIndex

offset

private javajs.util.P3 offset

scale

public float scale

pointScale

public float pointScale

faceTriangles

private int[][] faceTriangles

elemNos

private int[] elemNos

Constructor Detail

Polyhedron

Polyhedron()

Method Detail

set

Polyhedron set(String id,
               int modelIndex,
               javajs.util.P3 atomOrPt,
               javajs.util.P3[] points,
               int nPoints,
               int vertexCount,
               int[][] triangles,
               int triangleCount,
               int[][] faces,
               int[][] faceTriangles,
               javajs.util.V3[] normals,
               javajs.util.BS bsFlat,
               boolean collapsed,
               float distanceRef,
               float pointScale)

setInfo

Polyhedron setInfo(Viewer vwr,
                   Map<String,Object> info,
                   Atom[] at)

toInt2

private int[][] toInt2(boolean isSV,
                       Object o)

getInfo

Map<String,Object> getInfo(Viewer vwr,
                                 String property)

getElemNos

public int[] getElemNos()

getSymmetry

String getSymmetry(Viewer vwr,
                   boolean withPointGroup)

getVolume

private Float getVolume()

allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code

Returns:

volume

triangleArea

private float triangleArea(int i,
                           int j,
                           int k,
                           javajs.util.V3 vAB,
                           javajs.util.V3 vAC,
                           javajs.util.V3 vTemp)

triangleVolume

private float triangleVolume(int i,
                             int j,
                             int k,
                             javajs.util.V3 vAB,
                             javajs.util.V3 vAC,
                             javajs.util.V3 vTemp)

getState

String getState(Viewer vwr)

move

void move(javajs.util.M4 mat,
          javajs.util.BS bsMoved)

getNormixes

public short[] getNormixes()

setOffset

void setOffset(javajs.util.P3 value)