Package org.jmol.shapesurface

Class LcaoCartoon

java.lang.Object

org.jmol.shape.Shape

org.jmol.shape.MeshCollection

org.jmol.shapesurface.Isosurface

org.jmol.shapesurface.LcaoCartoon

All Implemented Interfaces:

MeshDataServer, VertexDataServer

public class LcaoCartoon
extends Isosurface

Field Summary

Fields

Modifier and Type	Field	Description
private Object	cappingObject
private String	fullCommand
(package private) boolean	isLonePair
private boolean	isMolecular
(package private) boolean	isRadical
private Integer	lcaoColorNeg
private Integer	lcaoColorPos
private String	lcaoID
private Float	lcaoScale
private boolean	lcaoTranslucent
private float	lcaoTranslucentLevel
private int	myColorPt
private javajs.util.V3	rotationAxis
private Object	slabbingObject
private javajs.util.BS	thisSet
private String	thisType

Fields inherited from class org.jmol.shapesurface.Isosurface

allowMesh, iHaveBitSets, isomeshes, jvxlData, keyXy, sg, thisMesh

Fields inherited from class org.jmol.shape.MeshCollection

bsDisplay, colix, color, connections, currentMesh, displayWithinDistance2, displayWithinPoints, explicitID, htObjects, isDisplayWithinNot, isFixed, linkedMesh, meshCount, meshes, modelIndex, nUnnamed, pickedMesh, pickedModel, pickedPt, pickedVertex, PREVIOUS_MESH_ID, previousMeshID, title

Fields inherited from class org.jmol.shape.Shape

bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr

Constructor Summary

Constructors

Constructor	Description
LcaoCartoon()

Method Summary

Modifier and Type	Method	Description
private void	createLcaoCartoon()
private void	createLcaoCartoon(int iAtom)
private void	deleteLcaoCartoon()
private void	deleteLcaoCartoon(int iAtom)
private String	getID(String id, int i)
String	getShapeState()
void	initShape()
void	merge(MeshCollection shape)	called by ParallelProcessor at completion
private void	setLcaoOn(boolean TF)
private void	setLcaoOn(int iAtom, boolean TF)
void	setProperty(String propertyName, Object value, javajs.util.BS bs)

Methods inherited from class org.jmol.shapesurface.Isosurface

addMeshInfo, addRequiredFile, addTriangleCheck, addVertexCopy, allocMesh, calculateGeodesicSurface, checkObjectClicked, checkObjectHovered, clearSg, discardTempData, fillMeshData, getCapSlabInfo, getCmd, getPlane, getPolygonColorData, getProperty, getPropertyData, getPropI, getShapeDetail, getSurfacePointIndexAndFraction, getValue, invalidateTriangles, newSg, notifySurfaceGenerationCompleted, notifySurfaceMappingCompleted, setOutputChannel, setPropI, setRequiredFile, setScriptInfo, slabPolygons

Methods inherited from class org.jmol.shape.MeshCollection

checkExplicit, clean, deleteMeshI, deleteMeshKey, getIndexFromName, getMesh, getMeshList, getPickedPoint, getPropDataMC, getPropMC, resetObjects, setModelVisibilityFlags, setPropMC, setStatusPicked, setTokenProperty

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectDragged, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getPropShape, getSize, getSizeG, getTranslucentLabel, initializeShape, initModelSet, replaceGroup, setAtomClickability, setModelSet, setPropS, setShapeSizeRD, setSize, setSizeRD, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

thisType

private String thisType

myColorPt

private int myColorPt

lcaoID

private String lcaoID

thisSet

private javajs.util.BS thisSet

isMolecular

private boolean isMolecular

rotationAxis

private javajs.util.V3 rotationAxis

lcaoScale

private Float lcaoScale

lcaoTranslucent

private boolean lcaoTranslucent

lcaoTranslucentLevel

private float lcaoTranslucentLevel

lcaoColorPos

private Integer lcaoColorPos

lcaoColorNeg

private Integer lcaoColorNeg

isLonePair

boolean isLonePair

isRadical

boolean isRadical

cappingObject

private Object cappingObject

slabbingObject

private Object slabbingObject

fullCommand

private String fullCommand

Constructor Detail

LcaoCartoon

public LcaoCartoon()

Method Detail

initShape

public void initShape()

Overrides:

initShape in class Isosurface

setProperty

public void setProperty(String propertyName,
                        Object value,
                        javajs.util.BS bs)

Overrides:

setProperty in class Isosurface

setLcaoOn

private void setLcaoOn(boolean TF)

setLcaoOn

private void setLcaoOn(int iAtom,
                       boolean TF)

deleteLcaoCartoon

private void deleteLcaoCartoon()

deleteLcaoCartoon

private void deleteLcaoCartoon(int iAtom)

createLcaoCartoon

private void createLcaoCartoon()

createLcaoCartoon

private void createLcaoCartoon(int iAtom)

getID

private String getID(String id,
                     int i)

getShapeState

public String getShapeState()

Overrides:

getShapeState in class Isosurface

merge

public void merge(MeshCollection shape)

Description copied from class: MeshCollection

called by ParallelProcessor at completion

Overrides:

merge in class MeshCollection