#!/bin/sh

PARA=$@

if [ -z $JAVA_HOME ]; then
        java=java
else
        java=$JAVA_HOME/bin/java
fi

if [ -x /usr/share/proalign ]; then
        if [ -r /usr/share/proalign/ProAlign.jar  ]; then 
                #cd /usr/share/proalign && $java -jar ProAlign.jar
                $java -jar /usr/share/proalign/ProAlign.jar $PARA
        else 
                echo "Could not find /usr/share/proalign/ProAlign.jar"
        fi
else 
        echo "Could not find /usr/share/proalign directory."
fi

