50454890ee703128a425759a9625afba *DESCRIPTION
9491ef162a5a3b5950dd07cb5c03fbb4 *NAMESPACE
2799b63ff94829eaf7ac6b9906f89e45 *R/AllClasses.R
4cb101dee10dfe8f45a4f70f97f393fc *R/BSseq_plots.R
0b59c4e33c750acdc815246dcf437881 *R/BSseq_util.R
b1b088a1a31aa178afd41bc2c7903115 *R/DML.R
6125dedf507ebebc6786a910f4373141 *R/DML.multiFactor.R
03224954735f34c79d58a80174367c7d *R/DMR.R
74f93771cb2424db905065ca839283cf *R/RNAseqWrapper.R
ed8fbbe5aa623cd3f9064ad7d85deeb4 *R/estDispersion.R
2e6c7eb1ae7afff4397a7a75a19be07f *R/estDispersion.multiFactor.R
31d12b17d268985952c939bbb9cdbae7 *R/estDispersion.notrend.R
21e9ee796ba624eb4979a66600a329a7 *R/estDispersion.trend.R
912efcc6b6486d6b1922914a221e1acb *R/estDispersion.util.R
d51d8a5b61f5637d14bbef41e5da50f5 *R/locfdr.R
88b779d3b1eec99224a3379a2aa81ab2 *R/locfns.R
6af6583173b214039645812c314cfcb9 *R/lrtest.R
106d6b65f87c06f3425f7d168626ce14 *R/normalization.R
98d3007e690125a31e603253259973af *R/util.R
2f1e56360fdec26a3912c924b478162d *R/waldTest.R
9cc9e9198bc0cca820568f2605929031 *build/vignette.rds
b88507e8da00356e835e4f16c83b99c9 *data/RRBS.RData
a0fafc32d55639d6a848e63076efda1c *data/seqData.rda
d6797679130d18413e491fb653b3ce9a *inst/CITATION
36e1d77ebf539ac72a74594410b0401d *inst/NEWS
423b784faf710ee8010696d918249908 *inst/doc/DSS.R
bbabc0a3d81238f61864c8980d80abec *inst/doc/DSS.Rmd
8c35e840ae52d9459a44d1c4c501cb91 *inst/doc/DSS.html
22ab7717a24a37a8b4db92423a4986ec *inst/extdata/cond1_1.txt
68e715f230ffbaeb8c3c5e5aafd01ea3 *inst/extdata/cond1_2.txt
48b04097d96a932b78634b23093ec117 *inst/extdata/cond2_1.txt
08fcab2e784a34e945a1e8ef579c029c *inst/extdata/cond2_2.txt
e6a1a1ae15e724fccddf1178bdac0c19 *man/DMLfit.multiFactor.Rd
49926c979d6948f05deacb61f3f58e08 *man/DMLtest.Rd
c1358d9f68b44ee2e68b993e64214738 *man/DMLtest.multiFactor.Rd
84bb0592a34b999b18a4d72555c88bae *man/DSS-package.Rd
b47101ebdc8922631a0200a0431155a6 *man/DSS.DE.Rd
e7cb8a8db0c166cee0c09132a2e3297e *man/RRBS.Rd
87df3b4beee51ad7b9a3bcabfc7bd846 *man/SeqCountSet-class.Rd
fb793057336246fca6db662b895fc4c4 *man/callDML.Rd
b750b9a8ae31dfaff02d173b0b34dd06 *man/callDMR.Rd
711c1b603fc03c32b8f8ad3a918cfb46 *man/design.Rd
5910610c3a915d4cb797d431c62033fc *man/dispersion.Rd
dd79cf9aab053b12c2f9b6257309288f *man/estDispersion.Rd
bea35dbd426125731d4b4036a1630f3c *man/estNormFactors.Rd
304b2f0710fe88b27178a079f2869f54 *man/makeBSseqData.Rd
8845fc99b3b555a43791c434eabd7e4f *man/normalizationFactor.Rd
22ecfe1ded2a20b8e9ace42f51730486 *man/seqData.Rd
11bf352b4f55abce777ab2c92bc4d624 *man/showOneDMR.Rd
b34c32346e9cdbb68c77877cf9003d59 *man/waldTest.Rd
3863f73a4c5c017b347721b56665d6c8 *src/DSS.h
1f1c2f3e74339c3898b34247a155e39f *src/compute_var_smooth.c
6aa1656f681aad750b1e8bd1c4eae4d8 *src/filter.c
103f37e83dc56a3bb99b4d2c5f1224cb *src/nitem.c
bbabc0a3d81238f61864c8980d80abec *vignettes/DSS.Rmd
0568d93715e46aeb79125bc056a7fc95 *vignettes/DSS.bib
ca1fa8ff377573b1c3b598a2843db3a2 *vignettes/aDMR.png
a3ec62affda3896289f748d90ee3d931 *vignettes/parallel.png
